Appendix A: Tables

Net Primer uses various standard values in its formulas. Many of them are given below in tabular form.

  1. Table of Extinction Coefficient values3 (in A260 units/µmol):

Pair values -

Second Nucleotide ®
First Nucleotide ¯

dA

dC

dG

dT

dA

13.7

10.6

12.5

11.4

dC

10.6

7.3

9.0

7.6

dG

12.6

8.8

10.8

10.0

dT

11.7

8.1

9.5

8.4

Individual values -

dA = 15.4 dT = 8.7 dC = 7.4 dG = 11.5

  1. Table of entropy values of a nearest neighbor nucleotide2 (in -cal/°K/mol):

Second Nucleotide ®
First Nucleotide ¯

dA

dC

dG

dT

dA

24.0

17.3

20.8

23.9

dC

12.9

26.6

27.8

20.8

dG

13.5

26.7

26.6

17.3

dT

16.9

13.5

12.9

24.0

  1. Table of enthalpy values of a nearest neighbor nucleotide2 (in -cal/mol):

Second Nucleotide ®
First Nucleotide ¯

dA

dC

dG

dT

dA

9100

6500

7800

8600

dC

5800

11000

11900

7800

dG

5600

11100

11000

6500

dT

6000

5600

5800

9100