Home >> Products >> Beacon Designer™ >> Design FRET Probes

Beacon Designer™

FRET Probe Design

Beacon Designer™ designs optimal FRET probes and compatible primers free of runs, repeats and dimers to ensure high signal fidelity. The primers can be used for allele discrimination and identification or for studying the mRNA expression levels.

Using Beacon Designer™, you can also evaluate pre-designed FRET assays using the Beacon Designer™ rating algorithm. You can also find compatible primer sets for pre-designed FRET probes or vice-versa.

Read about FRET probez

Automate Your Real Time PCR Primer and Probe Design

Beacon Designer™ automates the design of real time primers and probes. It is used by molecular biologists worldwide to design successful real time PCR assays. It saves the time and the money involved in failed experiments. Beacon Designer™ is a flexible solution to your real time primer and probe design needs and pays for itself many times over.

Specific and Efficient Design: How Beacon Designer™ Makes it Possible?

You can BLAST search sequences and search for template structures from within the program. The results of both these searches are used while designing primers and probes. The regions that exhibit significant cross homologies and template structures are avoided automatically during the design.


  • SYBR® Green Primer Design
  • TaqMan® Probe Design
  • Multiplex Real Time PCR Assay Design
  • HRMA Primer Design
  • MethyLight TaqMan® Design
  • Molecular Beacon Design
  • NASBA® Assay Design
  • FRET Probe Design
  • Scorpions® Design
  • Avoiding Cross Homology- For Specific Oligo Design
  • Avoid Template Structures- Increase Primer Efficiency
  • Oligo Rating


customer service software technical support
Live Chat by Comm100