Citations and Reviews

Title/Description	Author and Details	Year
Down-Regulatory Effects of miR-211 on Long Non-Coding RNA SOX2OT and SOX2 Genes in Esophageal Squamous Cell Carcinoma	Shafiee, Mohammad, Seyed Ahmad Aleyasin, Mohammad Vasei, Shahriar Semnani, Seyed Javad Mowla Cell Journal 17, no. 4 (2016): 593. http://www.celljournal.org/library/upload/article/ af_25274454563445346233248254233684274852742-Mohammad%20Shafiee.pdf	2016
Common AZFc structure may possess the optimal spermatogenesis efficiency relative to the rearranged structures mediated by non-allele homologous recombination	Yang, Bo, Yong-yi Ma, Yun-qiang Liu, Lei Li, Dong Yang, Wen-ling Tu, Ying Shen, Qiang Dong, and Yuan Yang Scientific reports 5 (2015), Article number: 10551. http://www.nature.com/articles/srep10551	2015
Association between the Advanced Glycosylation End Product-Specific Receptor Gene and Cardiovascular Death in Older Men	Biros, Erik, Corey S. Moran, Paul E. Norman, Graeme J. Hankey, Bu B. Yeap, Osvaldo P. Almeida, Leon Flicker, Richard White, Rhondda Jones, and Jonathan Golledge PloS one 10, no. 7 (2015). http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4520603/	2015
Canonical single nucleotide polymorphisms (SNPs) for high-resolution subtyping of Shiga-toxin producing Escherichia coli (STEC) O157: H7	Griffing, Sean M., Duncan R. MacCannell, Amber J. Schmidtke, Molly M. Freeman, Eija Hyytiä-Trees, Peter Gerner-Smidt, Efrain M. Ribot, and James L. Bono PloS one 10, no. 7 (2015): e0131967. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131967	2015
Identification of reference genes for quantitative expression analysis of MicroRNAs and mRNAs in barley under various stress conditions	Ferdous, Jannatul, Yuan Li, Nicolas Reid, Peter Langridge, Bu-Jun Shi, and Penny J. Tricker PloS one 10, no. 3 (2015): e0118503. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0118503	2015
High-resolution microscopy of active ribosomal genes and key members of the rRNA processing machinery inside nucleolus-like bodies of fully-grown mouse oocytes	Shishova, Kseniya V., Yuriy M. Khodarovich, Elena A. Lavrentyeva, and Olga V. Zatsepina Experimental cell research 337, no. 2 (2015): 208-218. http://www.sciencedirect.com/science/article/pii/S0014482715300549	2015
The Generation of Insulin Producing Cells from Human Mesenchymal Stem Cells by MiR-375 and Anti-MiR-9	Jafarian, Arefeh, Mohammad Taghikani, Saeid Abroun, Amir Allahverdi, Maryam Lamei, Niknam Lakpour, and Masoud Soleimani PloS one 10, no. 6 (2015): e0128650. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128650	2015
Eight New Genomes and Synthetic Controls Increase the Accessibility of Rapid Melt-MAMA SNP Typing of Coxiella burnetii	Edvin Karlsson, Anna Macellaro, Mona Byström, Mats Forsman, Dimitrios Frangoulidis, Ingmar Janse, Pär Larsson, Petter Lindgren, Caroline Öhrman, Bart van Rotterdam, Andreas Sjödin and Kerstin Myrtennäs, PLoS One. 2014; 9(1): e85417. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897454/	2014
Rapid Molecular Characterization of Acinetobacter baumannii Clones with rep-PCR and Evaluation of Carbapenemase Genes by New Multiplex PCR in Hospital District of Helsinki and Uusimaa	Tanja Pasanen, Suvi Koskela, Sointu Mero, Eveliina Tarkka, Päivi Tissari, Martti Vaara, and Juha Kirveskari PLoS One. 2014; 9(1): e85854. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897539/	2014
Development of a Cost-Effective Method for Capripoxvirus Genotyping Using Snapback Primer and dsDNA Intercalating Dye	Esayas Gelaye, Charles Euloge Lamien, Roland Silber, Eeva S. M. Tuppurainen,Reingard Grabherr and Adama Diallo PLoS One. 2013; 8(10): e75971. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3792100/	2013
Comparison between Chondrogenic Markers of Differentiated Chondrocytes from Adipose Derived Stem Cells and Articular Chondrocytes In Vitro	Mohmmad Mardani,Batool Hashemibeni, Malek Masoud Ansar, Sayeed Hamid Zarkesh Esfahani, Mohmmad Kazemi, Vahid Goharian, Nafiseh Esmaeili and Ebrahim Esfandiary, Iran J Basic Med Sci. 2013 June; 16(6): 763–773. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3758031/	2013
Simultaneous Quantification of Multiple Bacteria by the BactoChip Microarray Designed to Target Species-Specific Marker Genes	Annalisa Ballarini,Nicola Segata,Curtis Huttenhower and Olivier Jousson PLoS One. 2013; 8(2): e55764. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569451/	2013
Transcriptome analysis of embryo maturation in maize	Keat Thomas Teoh, Deborah Vicuna Requesens, Shivakumar P Devaiah, Daniel Johnson, Xiuzhen Huang, John A Howard and Elizabeth E Hood BMC Plant Biol. 2013; 13: 19. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621147/	2013
The influence of cerebrospinal fluid on epidermal neural crest stem cells may pave the path for cell-based therapy	Sareh Pandamooz, Mohammad Naji, Farid Alinezhad, Amin Zarghami,and Mohsen Pourghasem Stem Cell Res Ther. 2013; 4(4): 84. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3854676/	2013
Detection of the intercellular adhesion gene cluster (ica) in clinical Staphylococcus aureus isolates	Amirmorteza Ebrahimzadeh Namvar, Babak Asghari, Fatemeh Ezzatifar, Gholamreza Azizi, and Abdolaziz Rastegar Lari GMS Hyg Infect Control. 2013; 8(1): Doc03. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746602/	2013
Validation of eDNA Surveillance Sensitivity for Detection of Asian Carps in Controlled and Field Experiments	Andrew R. Mahon, Christopher L. Jerde, Matthew Galaska, Jennifer L. Bergner, W. Lindsay Chadderton, David M. Lodge, Margaret E. Hunter, and Leo G. Nico PLoS One. 2013; 8(3): e58316 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3589332/	2013
Expert Guide-Definitive qPCR Assay Design	Stephen Bustin, http://itunes.apple.com/gb/book/definitive-qpcr/id509231219?mt=11	2012
Selection of reference genes for qPCR in hairy root cultures of peanut	Jose Condori, Cesar Nopo-Olazabal, Giuliana Medrano and Fabricio Medina-Bolivar BMC Research Notes 2011, 4:392; Published: 10 October 2011 http://www.biomedcentral.com/1756-0500/4/392/abstract	2011
ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design	Marco Severgnini, Paola Cremonesi, Clarissa Consolandi, Giada Caredda, Gianluca De Bellis, Bianca Castiglioni. ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design. Nucleic acids research. 2009 Sep;37(16): e109 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2760787/?tool=pmcentrez	2009
A roadmap for zinc trafficking in the developing barley grain based on laser capture microdissection and gene expression profiling.	Birgitte Tauris, Søren Borg, Per L Gregersen, Preben B Holm. A roadmap for zinc trafficking in the developing barley grain based on laser capture microdissection and gene expression profiling. Journal of experimental botany. 2009;60(4): 1333-47 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2657541/?tool=pmcentrez	2009
Direct Sequence Detection of Structured H5 Influenza Viral RNA	Matthew B. Kerby, Sarah Freeman, Kristina Prachanronarong, Andrew W. Artenstein, Steven M. Opal and Anubhav Tripathi Journal of Molecular Diagnostics 2008, Vol. 10, No. 3 http://jmd.amjpathol.org/article/S1525-1578(10)60154-7/fulltext	2008
Occurrence and Genetic Diversity of Bacillus anthracis Strains Isolated in an Active Wool-Cleaning Factory	Pierre Wattiau, Silke R. Klee, David Fretin, Mieke Van Hessche, Marie Ménart, Tatjana Franz, Camille Chasseur, Patrick Butaye, Hein Imberechts Applied and Environmental Microbiology, July 2008, p. 4005-4011, Vol. 74, No. 13 http://aem.asm.org/cgi/content/abstract/74/13/4005	2008
Design of Microarray Probes for Detection of Mutations	Almeida, P. Carreto, L. Oliveira, J.L. Parque Tecnol. de Cantanhede, Cantanhede; Biocomputation, Bioinformatics and Biomedical Technologies, 2008. Page(s): 137-142 BIOTECHNO '08. International Conference on Publication Date: June 29 2008-July 5 2008. Page(s): 137-142 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4561148	2008
Validation of reference genes for qPCR studies on Caco-2 cell differentiation	Claudia Pianaa, Michael Wirtha, Stefan Gerbesb, Helmut Viernsteina, Franz Gabora and Stefan Toegela European Journal of Pharmaceutics and Biopharmaceutics, 2008 - Elsevier http://www.sciencedirect.com/science/article/pii/S0939641108001197	2008
Genomic DNA sequence comparison between two inbred soybean cyst nematode biotypes facilitated by massively parallel 454 micro-bead sequencing	Sadia Bekal, J. P. Craig, M. E. Hudson, T. L. Niblack, L. L. Domier and K. N. Lambert Journal Molecular Genetics and Genomics;Issue Volume 279, Number 5 / May, 2008 Pages 535-543 http://www.springerlink.com/content/r285636r360l8712/	2008
Detection and characterisation of human metapneumovirus from children with acute respiratory symptoms in north-west England, UK	M. Hopkins, C. Redmond, J. Shaw, I. Hart, C. Hart, R. Smyth, M. Semple ELSEVIER Journal of Clinical Virology, July 2008, Volume 42, Issue 3, Pages 273-279 http://www.sciencedirect.com/science/article/pii/S1386653208001066	2008
Comparison between chondroprotective effects of glucosamine, curcumin and diacerein in IL-1ß-stimulated C-28/I2 chondrocytes	S. Toegel, S. Wu, C. Piana, F. Unger, M. Wirth, M. Goldring, F. Gabor, H. Viernstein Osteoarthritis and Cartilage, October 2008, Volume 16, Issue 10, Pages 1205-1212 http://www.sciencedirect.com/science/article/pii/S1063458408000265	2008
AlleleID: A Pathogen Detection and Identification System	Arun Apte and Siddharth Singh Methods Mol Biol. 2007;402:329-46 PMID: 17951804 [PubMed - indexed for MEDLINE] http://www.ncbi.nlm.nih.gov/pubmed/17951804	2007
Characterizing the Meiotic Failure and Transcriptional Aberrations Caused by Mutation of A-Myb in Mice	Barash, Alexander 2007 - dspace.library.cornell.edu https://ecommons.cornell.edu/handle/1813/7885	2007
Salmonid host response to infectious hematopoietic necrosis (IHN) virus: Cellular receptors, viral control and novel pathways of defence	Kristina Miller, Garth Traxlera, Karia Kaukinena, Shaorong Lia, Jon Richarda and Norma Ginther Aquaculture; Volume 272, Supplement 1, 2007, Pages S217-S237 http://www.sciencedirect.com/science/article/pii/S0044848607008435	2007
Selection of reliable reference genes for qPCR studies on chondroprotective action	Toegel S, Huang W, Piana C, Unger FM, Wirth M, Goldring MB, Gabor F, Viernstein H. BMC Mol Biol. 2007; 8: 13. PMCID: 1820791 http://www.pubmedcentral.nih.gov/articlerender.fcgi?	2007

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