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SimGlycan®

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Citations and Reviews

S. No. Poster Links
1 Meitei, N.S., Apte, A., Aich, U., & Saba, J. Development of Bioinformatics Support for High Throughput Isomeric Separation and the Structural Identification of Glycans by LC-MS. 63rd ASMS Conference on Mass Spectrometry & Allied Topics (2015), St. Louis. View Poster/Abstract
2 Meitei, N.S., Apte, A., Aich, U., & Saba, J. Informatics Support for Isomeric Separation and the Structural Identification of Labeled N-Glycans from Proteins. 13th Human Proteome Organization World Congress (2014), Madrid. View Poster/Abstract
3 Meitei, N.S., Apte, A., Snovida, S., Saba, J., & Rogers, J. Automating Mass Spectrometry-Based Quantitative Glycomics using Tandem Mass Tag (TMT) Reagents with SimGlycan. 62nd ASMS Conference on Mass Spectrometry and Allied Topics (2014), Baltimore. View Poster/Abstract
4 Saba, J., Apte, A., Meitei, N.S., & Viner, R. Automated Glycan Structural Isomer Differentiation Using SimGlycan Software. 59th ASMS Conference on Mass Spectrometry and Allied Topics (2011), Denver. View Poster/Abstract
5 Berger, S.J. Integration of SimGlycan into Waters Glycan/Glycopeptide Analysis Workflow. 58th ASMS Conference on Mass Spectrometry and Allied Topics (2010), Salt Lake City. View Poster/Abstract

 

S. No. Research Article Links
1 Meitei, N. S., Apte, A., Snovida, S.I., Rogers, J.C., Saba, J. (2015). Automating Mass Spectrometry-Based Quantitative Glycomics using Aminoxy Tandem Mass Tag Reagents with SimGlycan. Journal of Proteomics. doi:10.1016/j.jprot.2015.05.015 View Research Article/Paper
2 Yang JM, Ai J, Bao Y, Yuan Z, Qin Y, Xie YW, Tao D, Fu D, Peng 2. (2014). Investigation of the correlation between charge and glycosylation of IgG1 variants by liquid chromatography–mass spectrometry. Anal Biochem PMID: 24287081 View Research Article/Paper
3 Udayananth Aich , Deanna C. Hurum, Lipika Basumallick , Srinivasa Rao, Chris Pohl, Jeffrey S. Rohrer, Sebastian Kandzia (2014). Evaluation of desialylation during 2-amino benzamide labeling of asparagine-linked oligosaccharides. PMID: 24657360 View Research Article/Paper
4 Mindy Porterfield, Peng Zhao, Haiyong Han, John Cunningham, Kazuhiro Aoki, Daniel D. Von Hoff, Michael J. Demeure, J. Michael Pierce, Michael Tiemeyer and Lance Wells (2014). Discrimination between Adenocarcinoma and Normal Pancreatic Ductal Fluid by Proteomic and Glycomic Analysis. Proteome Res., 2014, 13 (2), pp 395–407 DOI: 10.1021/pr400422g View Research Article/Paper
5 Tsai, Y.M., Hsu, S.C., Zhang, J., Zhou, Y.F., Plunkett, B., Huang, S.K., & Gao, P.S. (2013). Functional interaction of cockroach allergens and mannose receptor (CD206) in human circulating fibrocytes. PLoS ONE, 8(5). View Research Article/Paper
6 Strum, J.S., Nwosu, C.C., Hua, S., Kronewitter, S.R., Seipert, R.R., Bachelor, R.J., An, H.J., & Lebrilla, C.B. (2013). Automated assignments of N- and O-site specific glycosylation with extensive glycan heterogeneity of glycoprotein mixtures. Anal Chem., 85(12), 5666-5675. View Research Article/Paper
7 Woodin, C.L., Maxon, M., & Desaire, H. (2013) Software for automated interpretation of mass spectrometry data from glycans and glycopeptides. Analyst, 138(10), 2793-2803 View Research Article/Paper
8 Schiel, J.E., Au, J., He, H.J., & Phinney, K.W. (2012). LC-MS/MS biopharmaceutical glycoanalysis: identification of desirable reference material characteristics. Anal Bioanal Chem., 403(8), 2279-2289. View Research Article/Paper
9 Saba, J. (2012). Accelerating Glycan Characterization: New Workflow Brings Together Multistage Mass Spec and Data Processing to Speed Analysis. Genetic Engineering & Biotechnology News, 32(10). View Research Article/Paper
10 Jaiswal, N., Saraswat, S., Ratnam, M., & Isailovic, D. (2012). Analysis of folate binding protein N-linked glycans by mass spectrometry. J Proteome Res., 11(3), 1551-1560. View Research Article/Paper
11 Balonova, L., Hernychova, L., Stulik, J., Toman, R., Butaye, P., & Ulrich, R.G. (2011). Analysis of Francisella Tularensis Glycoproteins, in BSL3 and BSL4 Agents: Proteomics, Glycomics and Antigenicity. Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. doi: 10.1002/9783527638192.ch6 View Research Article/Paper
12 Dixon, R.B., Bereman, M.S., Petitte, J.N., Hawkridge, A.M., & Muddiman, D.C. (2011). One-Year Plasma N-linked Glycome Intra-individual and Inter-individual Variability in the Chicken Model of Spontaneous Ovarian Adenocarcinoma. Int J Mass Spectrom., 305(2-3), 79-86. View Research Article/Paper
13 Böcker, S., Kehr, B., & Rasche, F.(2011). Determination of glycan structure from tandem mass spectra. IEEE/ACM Trans Comput Biol Bioinform., 8(4), 976-986. View Research Article/Paper
14 Leymarie, N., McComb, M.E., Naimy, H., Staples, G.O., & Zaia, J. (2012). Differential Characterization and Classification of Tissue Specific Glycosaminoglycans by Tandem Mass Spectrometry and Statistical Methods. Int J Mass Spectrom, 312, 144-154. View Research Article/Paper
15 Drake, R.R., Cazares, L.H., Jones, E.E., Fuller, T.W., Semmes, O.J., & Laronga, C. (2011). Challenges to developing proteomic-based breast cancer diagnostics. OMICS, 15(5), 251-259. View Research Article/Paper
16 Bereman, M.S., & Muddiman, D.C.(2011). N-linked global glycan profiling by nanoLC mass spectrometry. Methods Mol Biol, 790, 87-97. View Research Article/Paper
17 Prohaska, S.J., & Stadler, P.F. (2011) The use and abuse of -omes. Methods Mol Biol., 719, 173-196. View Research Article/Paper
18 Apte, A., & Meitei, N. S. (2010). Bioinformatics in glycomics: Glycan characterization with mass spectrometric data using SimGlycan™. In Functional Glycomics (pp. 269-281). Humana Press. View Research Article/Paper
19 Xie, H., Chakraborty, A., Ahn, J., Yu, Y.Q., Dakshinamoorthy, D.P., Gilar, M., Chen, W., Skilton, S.J., & Mazzeo, J.R.(2010). Rapid comparison of a candidate biosimilar to an innovator monoclonal antibody with advanced liquid chromatography and mass spectrometry technologies. MAbs., 2(4). View Research Article/Paper
20 White, K.Y., Rodemich, L., Nyalwidhe, J.O., Comunale, M.A., Clements, M.A., Lance, R.S., Schellhammer, P.F., Mehta, A.S., Semmes, O.J., & Drake, R.R. (2009) Glycomic characterization of prostate-specific antigen and prostatic acid phosphatase in prostate cancer and benign disease seminal plasma fluids.J Proteome Res., 8(2), 620-630. View Research Article/Paper
21 Bereman, M.S., Williams, T.I., & Muddiman, D.C.(2009). Development of a nanoLC LTQ orbitrap mass spectrometric method for profiling glycans derived from plasma from healthy, benign tumor control, and epithelial ovarian cancer patients. Anal Chem., 81(3), 1130-1136. View Research Article/Paper
22 Blow, N. (2009). Glycobiology: A spoonful of sugar. Nature,457(7229), 617-620. View Research Article/Paper

 

S. No. Application Note Links
1 Saba, J., Zumwalt, A., Meitei, N.S., Apte, A., & Viner, R. (2012). Automated Glycan Structural Isomer Differentiation Using Bioinformatics Tool. J Biomol Tech., 23(Suppl), S31. View Technical/Application Note
2 Albanese, J., & Lee, R. (2011). A Unique Workflow for Glycoprotein Characterization from Sample Preparation to MS/MS Spectral Interpretation. J Biomol Tech., 22(Suppl), S57. View Technical/Application Note
3 Albanese, J., Glueckmann M., & Lenz C. (2010). SimGlycan™ Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data Automated Data Interpretation for Glycan Characterization.

View Technical/Application Note

4 Aich, U., Birznieks, I., Saba,J., Liu, X., Viner,R., Hao, Z., Gendeh, G.S., Rao, S., Huhmer, A., Agroskin,Y., & Pohl, C. (2013). Novel Glycan Column Technology for the LC-MS Analysis of Labeled and Native N-Glycans Released from Proteins and Antibodies. View Technical/Application Note
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